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Break Room (formerly Off Topic)
Life under social isolation or mandatory "stay home orders".
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[QUOTE="kingofnobbys, post: 1978020, member: 81934"] AUSTRALIAN OMICRON OUTBREAK 09 December 2021 OMICRON WHAT WE KNOW Researchers have now proposed splitting the omicron lineage, known as B.1.1.529, into two sublineages: BA.1, for the version of omicron that was initially identified, and B.2, for the newfound version. The split was suggested and implemented within the last few days on Cov-Lineages, an online system used to document SARS-CoV-2 lineages and their spread. "There are two lineages within Omicron, BA.1 and BA.2, that are quite differentiated genetically," Francois Balloux, the director of the University College London Genetics Institute, told The Guardian. "The two lineages may behave differently," although that has yet to be confirmed. One key difference between the two sublineages may make BA.2 slightly harder to track, The Guardian reported. That's because BA.1 has a "deletion" in the gene that codes for its spike protein, which the virus uses to infect cells. This deletion, called 69-70del for short, eliminates six bases from the overall RNA sequence, which in turn deletes two "building blocks" from the final spike protein, according to the American Society for Microbiology. PCR tests scan for multiple genes on the coronavirus, including this spike protein gene, but variants with 69-70del won't test positive for the spike. Instead, they cause the PCR test to display an error that reads "S gene target failure." This quirk actually makes the variants with 69-70del, namely omicron and alpha, easier to spot on PCR. After flagging such cases, scientists then run the samples through a full genomic analysis, to confirm which variant caused a given infection. "The S-gene dropout was critical to get that quick view in many different parts of South Africa," and thus track the spread of the BA.1 sublineage, Sarah Otto, a professor in evolutionary biology at the University of British Columbia, told the Financial Times. But BA.2 does not carry the 69-70del mutation, meaning it won't stand out from other variants on standard PCR tests and scientists may need to look harder to find it. So far, there have been seven cases of BA.2 reported globally, with the cases appearing in South Africa, Australia and Canada, according to The Guardian. While there are a number of differences between the two omicron sublineages, there's no immediate reason to think that one will behave differently from the other, David Stuart, a professor of structural biology at Oxford University, told the Financial Times. "I don't think there's any reason to think that the new outlier is any more of a threat than the form of omicron that's knocking around at the moment in the U.K., but it is terribly early," he said. [URL unfurl="true"]https://www.msn.com/en-au/news/techandscience/newfound-flavor-of-omicron-variant-may-be-harder-to-track/ar-AARCwFt?ocid=msedgdhp&pc=U531[/URL] Genetic maps for the two Omicrons [img]https://i.postimg.cc/GtjkHd0v/8dec2021-know-the-enemy-the-covid-variants-OMICRON-1-AND-2-is-the-NEW-scourge-of-hu-Manity.png[/img] Omicron Detections in NSW There is now a total of 42 cases of COVID-19 with the Omicron variant in NSW. To date, no Omicron cases have been admitted to hospital in NSW for treatment of COVID-19. Omicron Detections in VIC 2 more suspected community cases of the Omicron variant have been uncovered in Victoria, with contact tracers racing to find their source. The health department on Thursday confirmed genomic testing is underway on another two cases, in the cities of Brimbank and Wyndham, who returned results with the S gene dropout, a signature of the new variant. Melbourne Airport has been put on alert after traces of the Omicron super variant were found in the wastewater - as Victoria records four suspected cases of the highly infectious strain. 'The samples from two airport catchments were collected on 1-2 December and are consistent with a known suspected case of the Omicron variant who visited the airport,' the health department said. Authorities say they are speaking with the suspected case and notifying any close or casual contacts. 'A number of contacts have been identified and instructed to quarantine for seven or 14 days based on their vaccination status,' they said. Vic Omicron total = 1 + 4 possibles Omicron Situation by state: NSW = 42 ACT = 5 NT = 1 QLD = 2 VIC = 1 TOT OMICRON = 51 [/QUOTE]
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